I think the best thing to do is take a visual diff program like NotePad++ or ExamDiff Pro and compare your Configuration.h file to the one that is included with the release. You should be able to move your settings over to the new file very quickly. I think you are running into problems because you have items turned on that are no longer controlling any thing. And you probably don't have other items enabled that are needed. (Some of the names for things have changed.)
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